orthonym.rules.nested_assembly

Note

Internal API. Names and behaviour may change between releases.

The name of a decorated ring assembly that is a substituent, labelled as what it is.

DEFINITIONS (the Blue Book): identical rings joined by single bonds are a ring assembly and

the PIN names the assembly as one unit, ‘[1,1’:4’,1’’-terphenyl]’ for three rings,:50157 among the PINs of the assembly prefixes). The substituent chokepoint names a fragment that holds an assembly with a group on one of its rings by one ring and cites the others as substituents of it (‘4-(4’-chloro[1,1’-biphenyl]-4-yl)phenyl’): a valid name, never the PIN, which is built only for two benzene rings (‘4’-chloro[1,1’-biphenyl]-4-yl’, ring_substituents._decorated_biphenylyl). Such a name is recorded as not the PIN, so it is labelled below pin_verified and the default tier declines it.

A name of a decorated assembly is a compound prefix: it is marked as one the Blue Book, ‘bis’ for a compound or complex substituent prefix).

orthonym.rules.nested_assembly.mark_decorated_assembly(mol, frag_atoms, name)

name of the fragment frag_atoms as the chokepoint returns it: unchanged unless the fragment is a ring assembly of identical rings that carries a group, whose name is then marked as a compound prefix, and recorded as not the PIN when it does not cite the assembly as one unit (N rings: N-1 primes in the name).